PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16427.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 522aa    MW: 58316.8 Da    PI: 6.2166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16427.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13361407455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  ++ YI++Lq
  KHN16427.1 361 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDTIAYINELQ 407
                 799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-4458221IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.18E-18356422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.149357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.34E-14360411No hitNo description
PfamPF000102.4E-10361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-18361421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MKVDAGLGRV VWDDEDKAML GAVLGGRALE FLMTNSVSNE SVLMAVGSEE GLQNKLSLSQ  60
SKSGDWVLGW GDGCCREPNE EEEEGAVTVR RRTLRVDEEE MQQRMRKRVL QKLHTTFGGE  120
DEDNYAFGLD HVTDTEMFFL ASMYFSFPRG HGAPGKCFAS GNHFWLKSVS VSDHCVRSSL  180
ANAAGIQTIV LVPTDLGVVE LGSVRMLPES FELLQAVKSV FSTPIPKVLV NTIRNQTHFR  240
EKLAVRKMED NRPWNNNNVS FPNVRSNGLH VSSCWPVNSG LRQPAPRVVA ELANGVRQDL  300
RLSNSYEPQR QVQMQIDFSG GTSRPSDVEA SCKEEQPSVA DERKPRKRGR KPANGREEPL  360
NHVEAERQRR EKLNQRFYAL RSVVPNISKM DKASLLGDTI AYINELQAKV KIMEAERERF  420
ESISNQEKEA PADVDIQAVQ DDEVIVRVSC PLDNHPLSKV IQTFNQTQIS VVESKLASAN  480
DAIFHTFVIK SQGSEQLTKD KLIAVFSPTE SNSLQPFSSV GW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-156722246193Transcription factor MYC3
4rqw_B2e-156722246193Transcription factor MYC3
4rs9_A2e-156722246193Transcription factor MYC3
4yz6_A2e-156722246193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RKPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520875.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ51e-162BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0B2Q9F10.0A0A0B2Q9F1_GLYSO; Transcription factor bHLH13
STRINGGLYMA03G41901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-153bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]